How I Built a Bioinformatics Pipeline: [A BASh-Based Variant Calling and Annotation Pipeline]

In science and life, humans (and maybe other creatures) always find a way to simplify certain activities in their lives. We often do this to reduce repetitive tasks and the risk of monotonous and boring work. Pipelines have a similar function.

A bioinformatics pipeline is a collection of commands that performs a particular function on biological data and generates the desired result. It passes data through a sequence of algorithms that generates an interpretation based on the intended research.

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